Papers

Gupta, A., Incardona, P., Aydin,  A. D., Gumhold, S., Günther, U., Sbalzarini, I. F.: An Architecture for Interactive In Situ Visualization and its Transparent Implementation in OpenFPM. ISAV’20 – In Situ Infrastructures for Enabling Extreme-Scale Analysis and Visualization at SuperComputing 2020. arXiv preprint / GitHub repository

Gupta, A., Günther, U., Incardona, P., Reina, G., Frey, S., Gumhold, S., Sbalzarini, I.F.: Parallel Compositing of Volumetric Depth Images for Interactive Distributed Volume Rendering. Submitted to LDAV 2020.

Arshadi, C., Günther, U., Eddison, M., Harrington, K.I.S., Ferreira, T.A.: SNT: A Unifying Toolbox for Quantification of Neuronal Anatomy. Submitted to Nature Methods. bioRxiv preprint 2020.07.13.179325 / GitHub repository

Günther, U., Harrington, K.I.S., Dachselt, R., Sbalzarini, I.F.: Bionic Tracking: Using Eye Tracking to Track Biological Cells in Virtual Reality. BioImage Computing at ECCV 2020. arXiv preprint / Supplementary Video / GitHub repository

Günther, U., Harrington, K.I.S.: Tales from the Trenches – Developing sciview, a new 3D Viewer for the ImageJ Community. VisGap, Eurographics/Eurovis, 2020 / Talk Recording / arXiv preprint

Günther, U., Pietzsch, T., Gupta, A., Harrington, K.I.S., Tomancak, P., Gumhold, S., and Sbalzarini, I.F.: scenery – Flexible Virtual Reality Visualisation on the Java VM. IEEE VIS, 2019 / Talk Recording / arXiv preprint / GitHub repository / Documentation

Daetwyler, S. Günther, U., Modes, Carl D., Harrington, K.I.S., and Huisken, J.: Multi-sample SPIM image acquisition, processing and analysis of vascular growth in zebrafish. Development, 2019 / bioRxiv preprint

Cheeseman, B.L., Günther, U., Susik, M., Gonciarz, K. and Sbalzarini, I.F.: Adaptive Particle Representation of Fluorescence Microscopy Images. Nature Communications, 2019 / bioRxiv preprint / GitHub repository

Royer, L.A., Weigert, M., Günther, U., Maghelli, N., Jug, F., Sbalzarini, I.F. and Myers, E.W.: ClearVolume: open-source live 3D visualization for light-sheet microscopy. Nature Methods, 2015 / GitHub repository / Website

Talks

Günther, U.: towards visualisation and modelling in virtual reality with scenery and sciview. Image-based Modelling & Simulation of Morphogenesis, Dresden, 2019

Günther, U., Royer, L.A.: Smart Microscopy / Smart Visualisation (invited talk), 5th Swiss Microscopy Core Facility Day, Fribourg, 2017

Peer-reviewed Posters

Gupta, A., Günther, U., Incardona,P., Aydin,A.D., Dachselt,R., Gumhold, S.,  Sbalzarini, I.F.: A Framework for Interactive Virtual Reality In Situ Visual- isation of Parallel Numerical Simulations. The 9th IEEE Symposium on Large Data Analysis and Visualization at IEEE VIS, 2019 (accepted) / arXiv preprint

Gupta, A., Günther, U., Incardona, P., and Sbalzarini, I.F.: Virtual Reality In Situ Visualization with Interactive Steering for Numerical Simulations, International Supercomputing Conference PhD Forum, 2019

Posters

Günther, U., Pietzsch, T., Rueden, C., Daetwyler, S., Huisken, J., Elicieri, K., Tomancak, P., Sbalzarini, I.F., and Harrington, K.I.S.: sciview - Next-generation 3D visualisation for ImageJ & Fiji, From Images to Knowledge with ImageJ and Friends, EMBL Heidelberg, 2018

Günther, U., Harrington, K.I.S., and Sbalzarini, I.F.: Exploring the scenery of lightsheet microscopy with virtual reality, LSFM2018, Dresden, 2018

Günther, U., Royer, L.A., Weigert, M., Maghelli, N., Jug, F., Sbalzarini, I.F., and Myers, E.W.: ClearVolume - from microscope to visualisation in seconds, VizBi, EMBL Heidelberg, 2016

Royer, L.A., Weigert, M., Günther, U., Maghelli, N., Jug, F., Sbalzarini, I.F., and Myers, E.W.: ClearVolume - open-source 4D live visualisation for light-sheet microscopy. Focus on Microscopy, Göttingen, 2015

Günther, U., Cheeseman, B.L., Tomancak, P., and Sbalzarini, I.F.: dive into data— immersive 3D particle visualisation, BioImageInformatics, Leuven, 2014